DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and rbm14

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_989050.1 Gene:rbm14 / 394647 XenbaseID:XB-GENE-491627 Length:468 Species:Xenopus tropicalis


Alignment Length:381 Identity:117/381 - (30%)
Similarity:168/381 - (44%) Gaps:80/381 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            |:|:||:|:.|...|:..|||:|||||.|.|:|.|.||||...::...|:::|||..||...:.|
 Frog     9 KIFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLNGRELNGKKMLV 73

  Fly    73 EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK 137
            |.:|.|  |.. |.||||||::......|:|::|:::|.|||||||::|.|||:....:.:.||:
 Frog    74 ELSKPR--PQN-TWKIFVGNVSSSCEVSEIRKMFEEHGRVVECDIVKDYAFVHMTRESESRAAIE 135

  Fly   138 ELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSA 202
            .|||:.|.|:.:.|::| .:|||....|          |.| |:..|       ..||  :|.|.
 Frog   136 ALNGKEVKGKRINVEMS-HKVRPVAANG----------SSH-SRRRP-------DDRE--APQSR 179

  Fly   203 GGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRF-EDSR-DLYERRYQTSRMRDFPPP 265
            ..|..|......|.               .:.....|:|.. |.|| ||||     ||.|...|.
 Frog   180 ESYNHRRATEAAYA---------------SYALKSNYERYAPESSRYDLYE-----SRPRPTSPM 224

  Fly   266 PISR-REPMPLP-------PTLSGSLRS-----CSVSRGYD-------TMFSRRSPPPPRSSNGM 310
            ..:| |.||..|       ..|:...||     .:::.||.       :.:|.::.....|.|..
 Frog   225 YYARDRSPMRRPDYALSQTAALASKYRSEAAGFGNLASGYSGQASALASSYSNQASALASSYNNQ 289

  Fly   311 -------SRYG-------SPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYAPY 352
                   |.||       |..|..|.:.....:..:..|.....|..|.....:||
 Frog   290 RAYTSSASGYGTDQIAAYSTQPSAYANQGSSIYGTQAASLASSYGSQPSHLSASPY 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 29/64 (45%)
RRM1_2_CoAA_like 87..152 CDD:409779 28/64 (44%)
hnRNP-R-Q <88..>258 CDD:273732 53/171 (31%)
rbm14NP_989050.1 RRM1_CoAA 8..76 CDD:241052 31/66 (47%)
RRM2_CoAA 84..151 CDD:241053 29/66 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1563362at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23147
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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