Protein Alignment lark and CG4612

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001246493.1
• Gene: CG4612 / 37914
• FlyBaseID: FBgn0035016
• Length: 307
• Species: Drosophila melanogaster
• Alignment Length: 159
• Identity: 42/159 - (26%)
• Similarity: 74/159 - (46%)
• Gaps: 20/159 - (12%)

  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN-------YGFVHMETEQQGRDAIQN 59
            |.:|  |::|.||:.......:...|..:|.::.|:|.|:       |||||.::|:..|.||:.
  Fly   110 PDSG--KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 172

  Fly    60 LNGYTLNEFAIKVEAAKSRR----APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-- 118
            :||...|...:.|.....||    ...|....::|.||:::.....:||:|:.||.:....::
  Fly   173 VNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLD 237

  Fly   119 -----RNYGFVHLDCVGDVQDAIKELNGR 142
                 |.:|||..:.......|:..|:|:
  Fly   238 EEGRSRRFGFVAYENPQSALAAVIGLHGK 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	21/71 (30%)
		RRM1_2_CoAA_like	87..152	CDD:409779	15/63 (24%)
		hnRNP-R-Q	<88..>258	CDD:273732	15/62 (24%)
CG4612	NP_001246493.1	RRM2_I_PABPs	115..185	CDD:240825	20/69 (29%)
		RRM3_I_PABPs	202..282	CDD:240826	15/65 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439620
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840