DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Srsf7

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001034124.2 Gene:Srsf7 / 362687 RGDID:1307425 Length:238 Species:Rattus norvegicus


Alignment Length:273 Identity:77/273 - (28%)
Similarity:106/273 - (38%) Gaps:71/273 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN---YGFVHLDCVGDVQDAIKELNGRVVDGQ 147
            ||::||||.......|:...|..||.:....|.||   :.||..:...|.:||::.|:|:|:.|.
  Rat    11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGS 75

  Fly   148 PLKVQVSTSRVR-------PKPGMGDP-EQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGG 204
            .::|::||...|       |.....|| ::||.||..||::.:|.| |......|......|.. 
  Rat    76 RVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHR-YSRRRRSRSRSRSHSRS- 138

  Fly   205 YRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISR 269
             |.|.|.|.            |.|            .|...||....||.::..:|        |
  Rat   139 -RGRRYSRS------------RSR------------SRGRRSRSASPRRSRSVSLR--------R 170

  Fly   270 REPMPLPPTLSGSL--------------RSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPHG 320
            .....|..:.|||:              ||.|:||...:....|||.|.|     ||..|.:|| 
  Rat   171 SRSASLRRSRSGSIIGSRYFQSRSRSRSRSRSISRPRSSRSKSRSPSPKR-----SRSPSGSPH- 229

  Fly   321 YEDFSRDAFDERM 333
                 |.|..|||
  Rat   230 -----RSASPERM 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 21/67 (31%)
hnRNP-R-Q <88..>258 CDD:273732 49/180 (27%)
Srsf7NP_001034124.2 RRM_SRSF7 12..88 CDD:410050 24/75 (32%)
Blue background indicates that the domain is not in the aligned region.

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