Protein Alignment lark and Srsf3

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001041372.1
• Gene: Srsf3 / 361814
• RGDID: 1309233
• Length: 164
• Species: Rattus norvegicus
• Alignment Length: 183
• Identity: 49/183 - (26%)
• Similarity: 68/183 - (37%)
• Gaps: 55/183 - (30%)

  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN---YGFVHLDCVGDVQDAIKELNGRVVDGQP 148
            |::||||.:.....|:...|..||.:....:.||   :.||..:...|..||::||:||.:.|..
  Rat    11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 75

  Fly   149 LKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRD 213
            ::|::|....|.: ..|.|..         |             ||.|               ||
  Rat    76 VRVELSNGEKRSR-NRGPPPS---------W-------------GRRP---------------RD 102

  Fly   214 PYPPPPPPP--------PFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSR 258
            .|....|||        .|.|.|.....|     |||.|.|.. .||.::.||
  Rat   103 DYRRRSPPPRRRSPRRRSFSRSRSRSLSR-----DRRRERSLS-RERNHKPSR 149

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779
		RRM1_2_CoAA_like	87..152	CDD:409779	21/67 (31%)
		hnRNP-R-Q	<88..>258	CDD:273732	46/180 (26%)
Srsf3	NP_001041372.1	RRM_SRSF3	6..86	CDD:241089	23/74 (31%)