Protein Alignment lark and CG12288

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Alignment Length: 203
• Identity: 48/203 - (23%)
• Similarity: 74/203 - (36%)
• Gaps: 72/203 - (35%)

  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYG----FVHMETEQQGRDAIQNLNG 62
            |......:|:|||...|:..:|..||:.|| :|:...::..|    |.|.:.:..|     :||.
  Fly   150 PAEEASTVFVGNLPINTKRVQLVKLFQPYG-LVQSIRLRTAGGKQLFKHKQRKVAG-----SLNA 208

  Fly    63 YTLNEFAIKVEAAKSRRAPN-----------TPTT--------------------KIFVGNLTDK 96
            |.:.|   |.|.|:...|.|           ||.:                    .||||:|...
  Fly   209 YVVLE---KPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYS 270

  Fly    97 TRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK-----------------ELNGRVV 144
            ....::||:|...|   |.|.:|        |:.|.....|                 |||..::
  Fly   271 ATEEQLREIFSSCG---EIDYIR--------CLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLL 324

  Fly   145 DGQPLKVQ 152
            |.:|:.|:
  Fly   325 DDRPINVE 332

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	20/68 (29%)
		RRM1_2_CoAA_like	87..152	CDD:409779	20/81 (25%)
		hnRNP-R-Q	<88..>258	CDD:273732	21/82 (26%)
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	24/89 (27%)
		RRM_SF	261..332	CDD:473069	20/81 (25%)