Protein Alignment lark and Ref2

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_609574.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Alignment Length: 220
• Identity: 45/220 - (20%)
• Similarity: 77/220 - (35%)
• Gaps: 53/220 - (24%)

  Fly    43 GFVHMETEQQGRDAIQ---NLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRE 104
            |.:.....:.|...||   |..|: :.:...|.|..  .:.|..||. :.|.||.......::.|
  Fly    33 GSIRKRNSEGGLRGIQRSRNGTGF-IRKSKFKQETL--LKPPKKPTL-VMVCNLDYGVDDDDIME 93

  Fly   105 LFQKYGTVVECDIVRNYGFVHLDCVG--------------DVQDAIKELNGRVVDGQPLKVQ-VS 154
            ||.:.|.|.:       ||||.|..|              :....|::.:|..:||:.||:. |.
  Fly    94 LFNQDGVVEK-------GFVHYDRDGNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQ 151

  Fly   155 TSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPP 219
            .:|...:..:.|...     |.|.:.....:      .|......|..|..:.|::....:.|.|
  Fly   152 NTRNFKRTDVDDLSL-----RMGSFKTRFLQ------NGTFKTRSLQNGFQKSRLFRNSSFKPRP 205

  Fly   220 PPPPFLRDRIMDGFRDYDYYDRRFE 244
                         |:.:::..|.|:
  Fly   206 -------------FKKHNFKSRAFD 217

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	7/32 (22%)
		RRM1_2_CoAA_like	87..152	CDD:409779	20/78 (26%)
		hnRNP-R-Q	<88..>258	CDD:273732	34/172 (20%)
Ref2	NP_609574.1	RRM_SF	75..149	CDD:473069	21/81 (26%)