DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and x16

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster


Alignment Length:294 Identity:72/294 - (24%)
Similarity:99/294 - (33%) Gaps:117/294 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN---YGFVHLDCVGDVQDAIKELNGRVVDGQP 148
            |::||:|.:..|..::..:|..||::....|.||   :.||..:...|..||::.|:||.|.|:.
  Fly     9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGRTVCGRR 73

  Fly   149 LKVQVST-----------------------SRVRPKPGMGDPEQCYRCGRSGHWSKEC------- 183
            .:|::||                       .|.|...|.|| ::||.||..||:::.|       
  Fly    74 ARVELSTGKYARSGGGGGGGGGGGGGGGLGGRDRGGGGRGD-DKCYECGGRGHFARHCRERKARQ 137

  Fly   184 ----------------------------PRLYGSAG------GGREPPSPLSAGGYRD-RMYGRD 213
                                        .|..||.|      .||:...  ||..|.| ...|..
  Fly   138 RRRSNSFSRSRSTSRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENG--SASRYSDHERNGSG 200

  Fly   214 PYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPT 278
            ....||||                  .||:||..|        .|:|                  
  Fly   201 AVDSPPPP------------------KRRYEDEDD--------DRVR------------------ 221

  Fly   279 LSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSR 312
              ||.||.|.||.......|.|||..|..:..||
  Fly   222 --GSPRSRSRSRSASPAVRRGSPPRRRGDSSASR 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 21/67 (31%)
hnRNP-R-Q <88..>258 CDD:273732 55/237 (23%)
x16NP_723226.1 RRM <1..>82 CDD:223796 24/72 (33%)
RRM_SRSF3_like 9..81 CDD:240819 23/71 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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