DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment lark and rbm38

DIOPT Version :9

Sequence 1:	NP_523957.1	Gene:	lark / 38811	FlyBaseID:	FBgn0011640	Length:	352	Species:	Drosophila melanogaster
Sequence 2:	NP_001103597.1	Gene:	rbm38 / 333991	ZFINID:	ZDB-GENE-030131-5923	Length:	234	Species:	Danio rerio

Alignment Length:	236	Identity:	53/236 - (22%)
Similarity:	74/236 - (31%)	Gaps:	86/236 - (36%)

- Green bases have known domain annotations that are detailed below.

  Fly    82 NTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKE 138
            :|..||||||.|...|....:|:.|:.:|.:.|..::        |.||||.:......:.|.|:
Zfish    21 DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKD 85

  Fly   139 LNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAG 203
            .| .::||:...|.:                                    |..|.:|.|||:
Zfish    86 PN-PIIDGRKANVNL------------------------------------AYLGAKPRSPLT-- 111

  Fly   204 GYR-----------DRMYGRDP---YPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRY 254
            ||.           .|.||...   ||.....|..|....:.......|.|  |..:    ..:|
Zfish   112 GYSTGVQQVHPTLIQRQYGLSQPYVYPQAVLQPSLLLPTQVSSTSSSPYLD--FSTA----YAQY 170

  Fly   255 QTSRMRDFP------------PP-------PISRREPMPLP 276
            ..|....:|            ||       .||...|.|||
Zfish   171 AASAFEQYPYAASPGFLSYMYPPGTAGPSSAISTPIPNPLP 211

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779
		RRM1_2_CoAA_like	87..152	CDD:409779	21/72 (29%)
		hnRNP-R-Q	<88..>258	CDD:273732	40/191 (21%)
rbm38	NP_001103597.1	RRM_RBM24_RBM38_like	25..100	CDD:240830	23/111 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910