Protein Alignment lark and syncripl

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_955973.1
• Gene: syncripl / 324384
• ZFINID: ZDB-GENE-030131-3104
• Length: 560
• Species: Danio rerio
• Alignment Length: 456
• Identity: 92/456 - (20%)
• Similarity: 141/456 - (30%)
• Gaps: 173/456 - (37%)

  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQ 58
            |..|| ::|:|.:.......||..||||.|.:.:..::        :.|.||...|::..:.|::
Zfish   159 PTIGT-EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQKAVK 222

  Fly    59 NLNG--------------------------------YTLNEFAIKVE------------------ 73
            ..|.                                ..:.|||...|
Zfish   223 LCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYHQPDDKKKNR 287

  Fly    74 ------------AAKSRRAPNTPTTKI---------------------------FVGNLTDKTRA 99
                        ||::||...:...|:                           ||.||......
Zfish   288 GFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTE 352

  Fly   100 PEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGM 164
            ..:.:.|.::|.:.....:::|.|:|.:.......|:.||:|:.::|:|:::      |..||
Zfish   353 ELLEKTFCQFGKLERVKKLKDYAFIHFEERDGAVKALAELHGKDLEGEPIEI------VFAKP-- 409

  Fly   165 GDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPY----PPPPPPPPFL 225
              |:|                      ..:|..:...|.  :.:||  |.|    ||....|...
Zfish   410 --PDQ----------------------KRKERKAQRQAA--KTQMY--DEYYYYGPPHVHQPTRA 446

  Fly   226 RDRIMDGFRDY----DYYDRRFEDSRDLYERRYQTSR---------MRDFPPPPISRREPMPLPP 277
            |.|   |.|.|    |||.  :||..:.|...|...|         ..||......|.......|
Zfish   447 RGR---GARGYSYPHDYYS--YEDYYNYYGYDYHNYRGGYDDPYYGYDDFQAHVRGRGNRGVRVP 506

  Fly   278 TLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMR-G 341
            |||.. |..|||||......|.:|...|...|               ||....:|....:|:. |
Zfish   507 TLSRG-RGSSVSRGRAAFCQRGAPGSSRGGRG---------------SRGGLQQRCRVGKGVEAG 555

  Fly   342 P 342
            |
Zfish   556 P 556

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	18/104 (17%)
		RRM1_2_CoAA_like	87..152	CDD:409779	16/91 (18%)
		hnRNP-R-Q	<88..>258	CDD:273732	41/204 (20%)
syncripl	NP_955973.1	RRM1_hnRNPQ	162..240	CDD:240927	17/78 (22%)
		RRM_SF	242..326	CDD:302621	9/83 (11%)
		RRM3_hnRNPR	338..409	CDD:240938	16/76 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910