DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and rbm14a

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001108616.1 Gene:rbm14a / 323721 ZFINID:ZDB-GENE-050522-496 Length:471 Species:Danio rerio


Alignment Length:401 Identity:109/401 - (27%)
Similarity:166/401 - (41%) Gaps:115/401 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTL 65
            |..:...|||:||||.:|...:|.|||..:|.||...|::.:.|||::.|.....||::|||...
Zfish     1 MDDSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNGREY 65

  Fly    66 NEFAIKVEAAKSRRAPNTP--TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVR-------NY 121
            ...::.||.:|.|     |  :||:|||||.......::.:||..||.|::||.|:       .|
Zfish    66 RGRSLVVEESKGR-----PLNSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGY 125

  Fly   122 GFVHLDCVGDVQDAIKELNGRVVDGQPL-----KVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSK 181
            .||:::...|.:.||:.|:|....|:||     |||.||::|          .|..||..||::.
Zfish   126 AFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELSKVQQSTNKV----------PCASCGAHGHFAG 180

  Fly   182 ECPRLYGSAGGGREPP-------------SPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGF 233
            |||.        ..||             :..:|.|.                |..::..:.:.|
Zfish   181 ECPI--------NRPPMEHHQSQAAVLAAAAAAAAGL----------------PLQVQQSVHNSF 221

  Fly   234 RDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRS------------- 285
            .:....|..|...:||     .|||:           :..|:...:.|:|.|             
Zfish   222 YNTASSDPTFAALKDL-----TTSRV-----------DGKPVSSMVYGALASQVYSSVADQVIGS 270

  Fly   286 -CSVSRGYDTMFSRRSPPPPRSSNGMSRYGS-PTPHGYEDFSRDAF--------DERMISSRGMR 340
             ...:.||.|  ...:||      |:: ||: |.||...:.:|..|        .|:...::..|
Zfish   271 TSQTAEGYPT--EAEAPP------GVA-YGTEPDPHTLFEAARARFFEQGQQVLAEQQAVTKSDR 326

  Fly   341 GPSPPGRRYAP 351
            ..||. ||.||
Zfish   327 DRSPI-RRTAP 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 25/64 (39%)
RRM1_2_CoAA_like 87..152 CDD:409779 26/76 (34%)
hnRNP-R-Q <88..>258 CDD:273732 49/194 (25%)
rbm14aNP_001108616.1 RRM_SF 7..75 CDD:302621 27/67 (40%)
RRM_SF 84..156 CDD:302621 25/71 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1563362at2759
OrthoFinder 1 1.000 - - FOG0002310
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
43.880

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