Protein Alignment lark and fne

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001401058.1
• Gene: fne / 32245
• FlyBaseID: FBgn0086675
• Length: 371
• Species: Drosophila melanogaster
• Alignment Length: 238
• Identity: 52/238 - (21%)
• Similarity: 95/238 - (39%)
• Gaps: 47/238 - (19%)

  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------------------------YGFVHM 47
            |.:..|.:.....|:|:||...|.:..|.:|::                          ||||:.
  Fly    28 LIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLGYGFVNY 92

  Fly    48 ETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTK---IFVGNLTDKTRAPEVRELFQKY 109
            ...:....|:..|||..|....|||..|:    |::.:.|   ::|..|......|::..:|..:
  Fly    93 VRAEDAEKAVNTLNGLRLQNKVIKVSYAR----PSSESIKGANLYVSGLPKNLSQPDLEGMFASF 153

  Fly   110 GTVVE----CD----IVRNYGFVHLDCVGDVQDAIKELNGRVVDG--QPLKVQVSTSRVR-PKPG 163
            |.::.    ||    :.:..||:..|...:.:.||:||||:...|  :|:.|:.:.:... .|..
  Fly   154 GKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQ 218

  Fly   164 MGDPEQCYRCGRSGHWSKECPRLYGSAGG---GREPPSPLSAG 203
            :..|...|...::...::.......|||.   |:.|...::.|
  Fly   219 IAPPLTAYLTPQAAAATRRLAGALPSAGRISIGKSPMLAINKG 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	20/89 (22%)
		RRM1_2_CoAA_like	87..152	CDD:409779	19/77 (25%)
		hnRNP-R-Q	<88..>258	CDD:273732	28/130 (22%)
fne	NP_001401058.1	ELAV_HUD_SF	23..369	CDD:273741	52/238 (22%)