DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and srsf4

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_955868.1 Gene:srsf4 / 321872 ZFINID:ZDB-GENE-030131-591 Length:366 Species:Danio rerio


Alignment Length:374 Identity:82/374 - (21%)
Similarity:137/374 - (36%) Gaps:98/374 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            ::::|.|..:.:..::...|:.||.::|.|:...||||..:..:...||:.:|||..|....:.|
Zfish     3 RVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIV 67

  Fly    73 E------------AAKSRR-------------APNTPTT-KIFVGNLTDKTRAPEVRELFQKYGT 111
            |            :.:|.|             .|.|.|. ::.|.||:.:....::::..::.|.
Zfish    68 EHTIGQRRDGGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENLSSRCSWQDLKDYMRQAGE 132

  Fly   112 VVECDI---VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV-------------QVSTSRVRP 160
            |...|.   .:|.|.:......|::.|:::|:|..|:|:.:::             ..|.||.|.
Zfish   133 VTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRLIEDRPGARRRRSYSRSASRSRS 197

  Fly   161 KPGMGDPEQCY-----RCGRSGHWSK----------ECPRLYGSAGGGRE----------PPSPL 200
            :.......:.:     |.|.||..|:          ...|:..|:.|.|:          ..||.
Zfish   198 RSRRSRRSRSHSRTSSRSGASGSRSRSRSTSKKAKSRSSRMEESSNGARKGGDSGRDNSLSRSPQ 262

  Fly   201 SAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRF---------EDSRDLYERRYQT 256
            :....|:...||..          .|.|.....|:    ||..         |.|:...|.|..|
Zfish   263 NKKSKRENKRGRSD----------SRSRSRSKSRN----DRDLSRESGSKSQEASKSGDEGRAGT 313

  Fly   257 SRMR-------DFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSR 298
            .|.|       ..||....|||......:.|.| ||.|.|:.|....||
Zfish   314 HRSRAHSRSRSQTPPNADQRRESRSRSRSRSKS-RSHSRSQSYSRSRSR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 17/64 (27%)
RRM1_2_CoAA_like 87..152 CDD:409779 14/80 (18%)
hnRNP-R-Q <88..>258 CDD:273732 42/219 (19%)
srsf4NP_955868.1 RRM_SF 1..81 CDD:473069 19/77 (25%)
RRM2_SRSF4 101..182 CDD:410157 17/80 (21%)

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