DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Rbm28

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001402807.1 Gene:Rbm28 / 312182 RGDID:1311336 Length:753 Species:Rattus norvegicus


Alignment Length:389 Identity:73/389 - (18%)
Similarity:137/389 - (35%) Gaps:125/389 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFV---HMETEQQGRDAIQNLNG 62
            ||:|.|....::.:|..||.:.|.|.:|.||        :.:|:|   .:|..|:....|....|
  Rat     6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEG 70

  Fly    63 YTLN----EFAIKVEAAKSRRAPNTPTTK----------------IFVGNLTDKTRAPEVRELFQ 107
            ..:|    :..:|.::.::|:..|:.:.|                :.:.||:.|....:::.:|.
  Rat    71 CKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFT 135

  Fly   108 KYGTVVECDI-------VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMG 165
            .||||:|.:|       :|.:.|:....:.:...|:|..|.:.:.|:.:.|..:.::.:.|... 
  Rat   136 HYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQ- 199

  Fly   166 DPEQCYRCGRSGHWSKECPRLYGSAGGGRE----PPSPLSAGGYRDRMYGRDPYPPPPPPPPFLR 226
                                 :.|..||::    .|...|....|                  :.
  Rat   200 ---------------------HTSVSGGKKSSERKPKESSKKSCR------------------VE 225

  Fly   227 DRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRG 291
            :::.|.  |.|..|...:|::|..:.               ||...:..|.    |:|..:|.|.
  Rat   226 EQVEDD--DDDGEDEEDDDTQDDEDE---------------SRDSTVASPV----SVRKRAVKRA 269

  Fly   292 YDTMFSRRSPPPPRSS-----------NGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSP 344
                      .|..|:           .|.|.||..|.|. |..:.:..||.:..|:..:...|
  Rat   270 ----------APEESTEEDTYDDSDLEEGSSSYGDGTAHS-ESSTEELEDEDVPVSKKKKRKLP 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 20/78 (26%)
RRM1_2_CoAA_like 87..152 CDD:409779 17/87 (20%)
hnRNP-R-Q <88..>258 CDD:273732 30/180 (17%)
Rbm28NP_001402807.1 RRM1_RBM28_like 5..78 CDD:409847 19/71 (27%)
RRM2_RBM28_like 115..190 CDD:409848 17/74 (23%)
PABP-1234 322..709 CDD:130689 1/1 (100%)
RRM3_RBM28_like 329..411 CDD:409849
RRM4_RBM28_like 481..575 CDD:409850
Blue background indicates that the domain is not in the aligned region.

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