DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment lark and Pabpc4

DIOPT Version :9

Sequence 1:	NP_523957.1	Gene:	lark / 38811	FlyBaseID:	FBgn0011640	Length:	352	Species:	Drosophila melanogaster
Sequence 2:	XP_006238860.1	Gene:	Pabpc4 / 298510	RGDID:	1305015	Length:	660	Species:	Rattus norvegicus

Alignment Length:	175	Identity:	49/175 - (28%)
Similarity:	85/175 - (48%)	Gaps:	20/175 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:||.|||:......|...|..:|.::.|.||      |.|.|||.||::....||:.:||
  Rat    96 SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160

  Fly    63 YTLNEFAIKVEAAKSRR-------APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN 120
            ..||:..:.|...|||:       |.....|.:::.|..::.....:||||.::|..:...::|:
  Rat   161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD 225

  Fly   121 -------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV 158
                   :|||..:...|...|::|:||:.:.|:.:.|..:..:|
  Rat   226 CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 270

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	24/70 (34%)
		RRM1_2_CoAA_like	87..152	CDD:409779	16/71 (23%)
		hnRNP-R-Q	<88..>258	CDD:273732	18/78 (23%)
Pabpc4	XP_006238860.1	PABP-1234	11..640	CDD:130689	49/175 (28%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..172	CDD:240825	26/74 (35%)
		RRM3_I_PABPs	190..269	CDD:240826	18/78 (23%)
		RRM4_I_PABPs	293..370	CDD:240827
		PABP	572..639	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910