DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Srsf5

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_038967784.1 Gene:Srsf5 / 29667 RGDID:3664 Length:270 Species:Rattus norvegicus


Alignment Length:259 Identity:61/259 - (23%)
Similarity:106/259 - (40%) Gaps:55/259 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            ::|||.|:...:..::...|:.||.:.:.|:.:.:|||..|..:...||:..|:|..|....:.:
  Rat     5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTI 69

  Fly    73 EAAKSR----------------RAP-----NTP----TTKIFVGNLTDKTRAPEVRELFQKYGTV 112
            |.|::|                |.|     |.|    ..::.|.||:.:....::::..::.|.|
  Rat    70 EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEV 134

  Fly   113 VECDIVR---NYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV---------QVSTSRVRPKPGMG 165
            ...|..|   |.|.|.....||:::||::|:|:.::|:.:|:         ..|.||.|.:....
  Rat   135 TFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSR 199

  Fly   166 DPEQCYRCGRSGHWSKECPRLYG---SAGGGREP--------------PSPLSAGGYRDRMYGR 212
            ...:. |..||..:|:...|...   |..|.|.|              .||.|....|.|...|
  Rat   200 SRSRS-RSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSR 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 17/64 (27%)
RRM1_2_CoAA_like 87..152 CDD:409779 18/76 (24%)
hnRNP-R-Q <88..>258 CDD:273732 37/154 (24%)
Srsf5XP_038967784.1 RRM1_SRSF5 5..74 CDD:410008 19/68 (28%)
RRM2_SRSF5 99..179 CDD:410158 20/79 (25%)

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