Protein Alignment lark and Pabpc1l

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: XP_038962521.1
• Gene: Pabpc1l / 296351
• RGDID: 1563142
• Length: 669
• Species: Rattus norvegicus
• Alignment Length: 173
• Identity: 50/173 - (28%)
• Similarity: 81/173 - (46%)
• Gaps: 23/173 - (13%)

  Fly     2 PG---AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN------YGFVHMETEQQGRDAI 57
            ||   :|...:||.||:.......|...|..:|:::...||.|      :||||.||.:..:.||
  Rat    91 PGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAI 155

  Fly    58 QNLNGYTLNEFAIKVEAAKSRR-------APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVEC 115
            ..:||..||:..:.|...|||:       |.....|.|:|.||........:::||.::|.....
  Rat   156 NTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSV 220

  Fly   116 DIVRN-------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
            .::|:       :||::.:...:.|.|:..:||:.|.||.|.|
  Rat   221 KVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYV 263

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	22/70 (31%)
		RRM1_2_CoAA_like	87..152	CDD:409779	19/72 (26%)
		hnRNP-R-Q	<88..>258	CDD:273732	19/71 (27%)
Pabpc1l	XP_038962521.1	PABP-1234	11..656	CDD:130689	50/173 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910