Protein Alignment lark and Pabpc4l

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001099899.1
• Gene: Pabpc4l / 295010
• RGDID: 1559517
• Length: 370
• Species: Rattus norvegicus
• Alignment Length: 175
• Identity: 46/175 - (26%)
• Similarity: 82/175 - (46%)
• Gaps: 20/175 - (11%)

  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:||.|||:......|...|..:|.::...|:      |.|||||.:.::....||:.:||
  Rat    95 SGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNG 159

  Fly    63 YTLNEFAIKVEAAKSR-------RAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN 120
            ..|.:..:.|...|||       |......|.:::.|..|......:|.:|.|||..:...::::
  Rat   160 KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD 224

  Fly   121 -------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV 158
                   :|||..|.....::|::::|||.::||.:.|..:..:|
  Rat   225 ASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKV 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	20/70 (29%)
		RRM1_2_CoAA_like	87..152	CDD:409779	17/71 (24%)
		hnRNP-R-Q	<88..>258	CDD:273732	19/78 (24%)
Pabpc4l	NP_001099899.1	PABP-1234	10..>369	CDD:130689	46/175 (26%)