Protein Alignment lark and Pabpc6

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001099678.1
• Gene: Pabpc6 / 292295
• RGDID: 1311201
• Length: 643
• Species: Rattus norvegicus
• Alignment Length: 406
• Identity: 92/406 - (22%)
• Similarity: 161/406 - (39%)
• Gaps: 87/406 - (21%)

  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:|:.|||....:..|...|..:|.::.|.||      |.|||||.||:::...||:.:||
  Rat    96 SGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160

  Fly    63 YTLNEFAIKVEAAKSRR-------APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-- 118
            ..||:..:.|...||||       |.....|.:::.||.:......:::||.::|..:...::
  Rat   161 MFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD 225

  Fly   119 -----RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV----------------RPKP 162
                 :.:|||..:...|.:.|:.|:||:.::|:.:.|..:..:|                :||.
  Rat   226 ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKI 290

  Fly   163 GMGDPEQCYRCGRSGHWSK------ECPRLYGSAGGGREPPSP--------LSAGGYRDRMYGRD 213
            .....::..||.....:.|      :..||       |:..||        ::..|.|.:.:|..
  Rat   291 EQVPQDRSVRCQGVNLYVKNLDDGIDDERL-------RKEFSPFGTITSAKVTMEGGRSKGFGFV 348

  Fly   214 PYPPPPPPPPFLRD---RIMDGFRDYDYYDRRFED-----SRDLYERRYQTSRMRDFPPPPISRR 270
            .:..|......:.:   ||:.....|....:|.|:     |....:|...||.:   |.|.|:
  Rat   349 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAV---PNPGIN-- 408

  Fly   271 EPMPLPPT--LSGSLRSCSV---SRGYDTMFSRRSPPPPRSSNGMSRYGS---PTPHGYEDFSRD 327
               |..|.  |||...:.:.   :||  |.::    |...:..|.|..||   ...|.:::.|..
  Rat   409 ---PFQPAQGLSGYFMTATAPTQNRG--TYYA----PNQTTQQGPSARGSAQGTRAHPFQNMSSA 464

  Fly   328 AFDERMISSRGMRGPS 343
            ......:.|....||:
  Rat   465 IHPSNTMPSFSTSGPT 480

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	24/70 (34%)
		RRM1_2_CoAA_like	87..152	CDD:409779	14/71 (20%)
		hnRNP-R-Q	<88..>258	CDD:273732	38/214 (18%)
Pabpc6	NP_001099678.1	PABP-1234	11..622	CDD:130689	92/406 (23%)