DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Rbm11

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001388776.1 Gene:Rbm11 / 288321 RGDID:1305195 Length:238 Species:Rattus norvegicus


Alignment Length:214 Identity:48/214 - (22%)
Similarity:77/214 - (35%) Gaps:55/214 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 IFVGNLTDKTRAPEVRELFQKYGTVVECDIV-------RNYGFVHLDCVGDVQDAIKELNGRVVD 145
            :|||||..:.|...:.|||.:.|.:.:..:.       :::|||.......|..||..|||..:.
  Rat    12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLNGIRLY 76

  Fly   146 GQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYR-DRM 209
            |:|:.||                  ||.|.|        |....|....|..:.:::..:| |.|
  Rat    77 GRPINVQ------------------YRFGSS--------RSSEPANQSFESCAKINSHSFRNDEM 115

  Fly   210 YGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMP 274
            ..|..:|.|..|       |.......:|:         .:::....:......||......|:|
  Rat   116 VCRPSFPVPFFP-------ITSAALPQEYF---------FFQKMQWYTHSPALQPPFYEMTAPLP 164

  Fly   275 LPPTLSGSLRSCSVSRGYD 293
            .|.:     .|||::...|
  Rat   165 NPAS-----DSCSLNHAPD 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 21/70 (30%)
hnRNP-R-Q <88..>258 CDD:273732 39/177 (22%)
Rbm11NP_001388776.1 RRM_RBM11 9..83 CDD:410006 21/70 (30%)
Blue background indicates that the domain is not in the aligned region.

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