Protein Alignment lark and Elavl3

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_758827.1
• Gene: Elavl3 / 282824
• RGDID: 628892
• Length: 367
• Species: Rattus norvegicus
• Alignment Length: 166
• Identity: 44/166 - (26%)
• Similarity: 73/166 - (43%)
• Gaps: 19/166 - (11%)

  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGYTL 65
            |.:..|.:.....|.::||...|.:..|.:|::        ||||:.........||..|||..|
  Rat    41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105

  Fly    66 NEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYG 122
            ....|||..|:...| :.....::|..|.......|:.:||.:||.::...|:        |..|
  Rat   106 QTKTIKVSYARPSSA-SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVG 169

  Fly   123 FVHLDCVGDVQDAIKELNGRVVDG--QPLKVQVSTS 156
            |:..|...:.::|||.|||:...|  :|:.|:.:.:
  Rat   170 FIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	20/71 (28%)
		RRM1_2_CoAA_like	87..152	CDD:409779	20/74 (27%)
		hnRNP-R-Q	<88..>258	CDD:273732	21/79 (27%)
Elavl3	NP_758827.1	ELAV_HUD_SF	36..366	CDD:273741	44/166 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910