Protein Alignment lark and Msi1

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_683688.1
• Gene: Msi1 / 259272
• RGDID: 628778
• Length: 362
• Species: Rattus norvegicus
• Alignment Length: 391
• Identity: 90/391 - (23%)
• Similarity: 140/391 - (35%)
• Gaps: 125/391 - (31%)

  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGYT 64
            |:|||.|..:|....||..|.::|.|.||.|:::        :|||.. .:|.|.|.:...:.:.
  Rat    21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF-MDQAGVDKVLAQSRHE 84

  Fly    65 LNEFAIKVEAAKSRRA-PN--TPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-------- 118
            |:...|..:.|..||| |.  |.|.|||||.|:..|...:|:..|:::|.|.:..::
  Rat    85 LDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRH 149

  Fly   119 RNYGFVHLDCVGDVQDAIK----ELNGRVVD---GQPLKVQVSTSRVRPKPGMGDPEQCYRCGRS 176
            |.:|||..:....|:...:    |:|.::|:   .||.:|...|...|              |||
  Rat   150 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSAR--------------GRS 200

  Fly   177 GHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDP---------YPPPPPPPPFLRDRIMDG 232
                                         |...||.|.         ||               |
  Rat   201 -----------------------------RVMPYGMDAFMLGIGMLGYP---------------G 221

  Fly   233 FRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTL--------------SGSL 283
            |:...|..|.:......|..::...|:         .|.|:|..|.|              :.:.
  Rat   222 FQATTYASRSYTGLAPGYTYQFPEFRV---------ERTPLPSAPVLPELTAIPLTAYGPMAAAA 277

  Fly   284 RSCSVSRGYDTMFSRRSPPP---PRSSNGMSRYGSPTPHG--YEDFSRDAFDERMISSRGMRGPS 343
            .:.:|.||..:.....:|||   |..:.|.....||.|..  |...::|:.....||:   ..|:
  Rat   278 AAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISA---ASPA 339

  Fly   344 P 344
            |
  Rat   340 P 340

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	22/72 (31%)
		RRM1_2_CoAA_like	87..152	CDD:409779	21/79 (27%)
		hnRNP-R-Q	<88..>258	CDD:273732	37/193 (19%)
Msi1	NP_683688.1	RRM1_MSI	21..96	CDD:409990	22/75 (29%)
		PABP-1234	<32..339	CDD:130689	82/377 (22%)
		RRM2_MSI	110..183	CDD:240769	19/72 (26%)