DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Safb

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001361548.1 Gene:Safb / 224903 MGIID:2146974 Length:939 Species:Mus musculus


Alignment Length:519 Identity:109/519 - (21%)
Similarity:151/519 - (29%) Gaps:193/519 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNGYTLN 66
            ::..|...|:||:|:.||.:||.||...||.|        ||||.|.|.::....|.:|:...|:
Mouse   431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCISHLHKTELH 495

  Fly    67 EFAIKVEAAKS----RRAPN---------TPTTKIFVGNL-------------------TDKTR- 98
            ...|.||.|||    :|.|:         ..:|.....||                   |:|:: 
Mouse   496 GKMISVEKAKSEPTGKRVPDRRDGDSKKEKASTSDRSANLKREEKGERKDDAKKTDDGSTEKSKD 560

  Fly    99 ------APEVRELFQKYGT-----VVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQ 152
                  .|..|....|.|:     .|..|..:....:.:...|..:.|.|..:.:....:...| 
Mouse   561 ADDQKPGPSERSRTTKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSV- 624

  Fly   153 VSTSRVRPKPGMGDPEQCYRCGRS-------GHWSK----------------------------- 181
            ||..:|:......|.|......||       ..|.:                             
Mouse   625 VSFDKVKESRKSRDSESRRERERSEREQRLQAQWEREERERLEIARERLAFHRHRLERERMERER 689

  Fly   182 -ECPRLYGSAGGGREP-----------------------PS---PLSAGGYRDRMYGRDPYPPPP 219
             |..|::......||.                       |:   |....|.||..|.      |.
Mouse   690 LERERMHVEQERRREQERIHREREELRRQQELRYEQERRPAVRRPYEVDGRRDDAYW------PE 748

  Fly   220 PPPPFLRDRI------MDGFRDYDYYDR---------RFEDSRDL--------YERRY------- 254
            .....|.||.      .|.|.|:|:.||         |.|.||.:        |..|:       
Mouse   749 AKRAALDDRYHSDFSRQDRFHDFDHRDRGRYPNHSVDRREGSRSMMGDREGQHYPERHGGPERHG 813

  Fly   255 -------------QTSRMRDFPPPPISRR----------EPMPLPPTLSGSLRSCSVSR---GYD 293
                         :.|..|..||||..||          :......|..|.:......|   |..
Mouse   814 RDSRDGWGYGSNKRLSEGRGLPPPPRGRRDWGEHGRRLEDDRAWQGTADGGMMERDHKRWQGGER 878

  Fly   294 TMFSRRSPPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGM--------RGPSPPGRRY 349
            :|.....|....:..|||..||..|.|       |....:|...||        ||..|...|:
Mouse   879 SMSGHSGPGHMMNRGGMSGRGSFAPGG-------ASRGHVIPRGGMQAGFGGQSRGSRPSDARF 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 24/70 (34%)
RRM1_2_CoAA_like 87..152 CDD:409779 13/95 (14%)
hnRNP-R-Q <88..>258 CDD:273732 48/306 (16%)
SafbNP_001361548.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
SAP 31..65 CDD:128789
PLN03124 32..>183 CDD:215591
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 64..117
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..429
PABP-1234 <392..>548 CDD:130689 34/116 (29%)
RRM_SAFB1_SAFB2 427..502 CDD:410080 24/70 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 499..661 31/162 (19%)
Interaction with POLR2A, SFRS1, SFRS9 and SFRS10. /evidence=ECO:0000250|UniProtKB:O88453 550..814 46/270 (17%)
Nuclear localization signal. /evidence=ECO:0000255 621..638 4/17 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 684..738 6/53 (11%)
RcnB <755..>844 CDD:444206 22/88 (25%)
Blue background indicates that the domain is not in the aligned region.

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