DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Rbm4

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001277051.1 Gene:Rbm4 / 19653 MGIID:1100865 Length:361 Species:Mus musculus


Alignment Length:333 Identity:115/333 - (34%)
Similarity:170/333 - (51%) Gaps:44/333 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            |||||||..:....|:|:|||:||.|:|||::|||||||:|.:....|||:||:.|.|:...|.|
Mouse     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67

  Fly    73 EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK 137
            ||:|::   :..:||:.|||::......|:|..|::||.|:|||||::|.|||::...|..:||:
Mouse    68 EASKNK---SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129

  Fly   138 ELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECP-----------RLYGSAG 191
            .|:.....|:.:.||:||||:|..|||||...|||||:.||||||||           ..|....
Mouse   130 GLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQY 194

  Fly   192 GGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYE--RRY 254
            |....|..:|   |.|.:|..:.|..                  .|.|.:|...:|. ||  ...
Mouse   195 GAVRTPYTMS---YGDSLYYNNTYGA------------------LDAYYKRCRAARS-YEAVAAA 237

  Fly   255 QTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPH 319
            ..|...::....:|:     ||...:.::.|...|...|. ::|...||..::...:...:.|..
Mouse   238 AASAYSNYAEQTLSQ-----LPQVQNTAMASHLTSTSLDP-YNRHLLPPSGAAAAAAAAAACTAA 296

  Fly   320 GYEDFSRD 327
            ....:.||
Mouse   297 STSYYGRD 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 34/64 (53%)
RRM1_2_CoAA_like 87..152 CDD:409779 24/64 (38%)
hnRNP-R-Q <88..>258 CDD:273732 62/182 (34%)
Rbm4NP_001277051.1 RRM1_RBM4 2..68 CDD:241050 34/64 (53%)
RRM2_RBM4 78..144 CDD:241051 25/65 (38%)
ZnF_C2HC 161..176 CDD:197667 11/14 (79%)
Interaction with TNPO3. /evidence=ECO:0000250 196..361 25/137 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I9095
eggNOG 1 0.900 - - E1_KOG0109
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 191 1.000 Inparanoid score I3862
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002310
OrthoInspector 1 1.000 - - otm42527
orthoMCL 1 0.900 - - OOG6_104638
Panther 1 1.100 - - LDO PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1736
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.820

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