DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Pabpc2

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_035163.1 Gene:Pabpc2 / 18459 MGIID:1349723 Length:628 Species:Mus musculus


Alignment Length:168 Identity:48/168 - (28%)
Similarity:84/168 - (50%) Gaps:20/168 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:||.||::......|...|..:|.::.|.||      |.:||||.|||:....||:.:||
Mouse    96 SGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNG 160

  Fly    63 YTLNE---FAIKVEAAKSRRAP-NTPT---TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-- 118
            ..||:   |..:.::.|.|.|. .|.|   |.:::.|..|:.....:..||.::|.::...::  
Mouse   161 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD 225

  Fly   119 -----RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
                 :.:|||..:...|.|.|:.|:||:.::|:.:.|
Mouse   226 EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 25/73 (34%)
RRM1_2_CoAA_like 87..152 CDD:409779 16/72 (22%)
hnRNP-R-Q <88..>258 CDD:273732 16/71 (23%)
Pabpc2NP_035163.1 PABP-1234 11..607 CDD:130689 48/168 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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