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Protein Alignment lark and Pabpc2
DIOPT Version :9
Sequence 1: | NP_523957.1 |
Gene: | lark / 38811 |
FlyBaseID: | FBgn0011640 |
Length: | 352 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_035163.1 |
Gene: | Pabpc2 / 18459 |
MGIID: | 1349723 |
Length: | 628 |
Species: | Mus musculus |
Alignment Length: | 168 |
Identity: | 48/168 - (28%) |
Similarity: | 84/168 - (50%) |
Gaps: | 20/168 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
:|...:||.||::......|...|..:|.::.|.|| |.:||||.|||:....||:.:||
Mouse 96 SGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNG 160
Fly 63 YTLNE---FAIKVEAAKSRRAP-NTPT---TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-- 118
..||: |..:.::.|.|.|. .|.| |.:::.|..|:.....:..||.::|.::...::
Mouse 161 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD 225
Fly 119 -----RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
:.:|||..:...|.|.|:.|:||:.::|:.:.|
Mouse 226 EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.910 |
|
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