Sequence 1: | NP_523957.1 | Gene: | lark / 38811 | FlyBaseID: | FBgn0011640 | Length: | 352 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001256408.1 | Gene: | rnp-1 / 179672 | WormBaseID: | WBGene00004384 | Length: | 305 | Species: | Caenorhabditis elegans |
Alignment Length: | 314 | Identity: | 84/314 - (26%) |
---|---|---|---|
Similarity: | 134/314 - (42%) | Gaps: | 61/314 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLK 150
Fly 151 VQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPR------------------LYGSAGGGREPP 197
Fly 198 SPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRD--LYERR------- 253
Fly 254 --YQTSRMRDFP------PPPISRREPMPL------PPTLSGSLRSCSVSRGYDTMFSRRSP--- 301
Fly 302 -PPPRSSNGMSRYGSPTPHGYED--FSRDAFDERMISSRGMRGPSP---PGRRY 349 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lark | NP_523957.1 | RRM1_2_CoAA_like | 8..73 | CDD:409779 | |
RRM1_2_CoAA_like | 87..152 | CDD:409779 | 27/64 (42%) | ||
hnRNP-R-Q | <88..>258 | CDD:273732 | 59/198 (30%) | ||
rnp-1 | NP_001256408.1 | RRM | <2..>83 | CDD:223796 | 36/82 (44%) |
RRM1_2_CoAA_like | 4..68 | CDD:240789 | 27/64 (42%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 57 | 1.000 | Domainoid score | I7240 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 95 | 1.000 | Inparanoid score | I3634 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S3124 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002310 | |
OrthoInspector | 1 | 1.000 | - | - | oto20074 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4630 |
SonicParanoid | 1 | 1.000 | - | - | X1736 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
9 | 8.940 |