Protein Alignment lark and rbm-34

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_502291.1
• Gene: rbm-34 / 178148
• WormBaseID: WBGene00008688
• Length: 394
• Species: Caenorhabditis elegans
• Alignment Length: 207
• Identity: 40/207 - (19%)
• Similarity: 73/207 - (35%)
• Gaps: 55/207 - (26%)

  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVEC------------------------DVVKNYGF-VHME 48
            :|:||:........:|.:|..:||:...                        |...:..| |...
 Worm   145 VFVGNMPLTMNEKSVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLTFYVKFG 209

  Fly    49 TEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQ-KYGTV 112
            .|:....|:: .||..|::..|:|:...|::........||||||..:.....:...|. :.|.|
 Worm   210 AEESVEKALK-YNGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPV 273

  Fly   113 VECDIVRN--------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQ 169
            ....|||:        :.||:..     ||:...|   .:..:.:|::....|:.
 Worm   274 EAVRIVRDKDTGKGKGFAFVNFK-----QDSSVSL---ALSMETIKMEKRDLRIT---------- 320

  Fly   170 CYRCGRSGHWSK 181
              :..:.||.:|
 Worm   321 --KVMKKGHLTK 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	16/88 (18%)
		RRM1_2_CoAA_like	87..152	CDD:409779	18/73 (25%)
		hnRNP-R-Q	<88..>258	CDD:273732	22/103 (21%)
rbm-34	NP_502291.1	RRM1_RBM34	144..233	CDD:409828	16/88 (18%)
		RRM2_RBM34	248..320	CDD:409829	19/79 (24%)