DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and aly-1

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_501588.1 Gene:aly-1 / 177735 WormBaseID:WBGene00000120 Length:223 Species:Caenorhabditis elegans


Alignment Length:146 Identity:29/146 - (19%)
Similarity:55/146 - (37%) Gaps:37/146 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLD------CVGDV-------QDAIKE 138
            :|.:.||.....:.::|:||.::.       :||.. |:.:      ..|||       ...|::
 Worm    73 RINLSNLAHTVHSGDLRQLFAEFK-------IRNVS-VNFNEHGKPVGTGDVTLPKRHADRLIQK 129

  Fly   139 LNGRVVDGQPLKVQVSTS-----RVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPS 198
            ..|..:||:.:|..:..|     ||:      .||...|...:|..::..|:......|     .
 Worm   130 FAGVSLDGKEIKFAIIDSANIANRVK------FPEAPRRAPSNGRPAQRAPKRQNVKSG-----K 183

  Fly   199 PLSAGGYRDRMYGRDP 214
            |....|.:.::..:.|
 Worm   184 PTGGAGAQKKLKAKKP 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 17/77 (22%)
hnRNP-R-Q <88..>258 CDD:273732 29/145 (20%)
aly-1NP_501588.1 RRM_SF 72..144 CDD:473069 17/78 (22%)
Blue background indicates that the domain is not in the aligned region.

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