Protein Alignment lark and sqd-1

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 256
• Identity: 54/256 - (21%)
• Similarity: 91/256 - (35%)
• Gaps: 89/256 - (34%)

  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHME-TEQQGRDAIQNLNGYTL 65
            |:|:|.:..:....:|.:.|.:||.|.:..|.      ::.||..:| |..:|..........|:
 Worm    30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTI 94

  Fly    66 NEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECD--------IVRNYG 122
            ...:::|:.||||.     ..|:|||.|.......::|..|:::|.|.:.:        ..||:.
 Worm    95 KGKSVEVKPAKSRE-----NKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154

  Fly   123 FVHL--------------------DCVGDVQDAIKE------LNGRVVDGQPLKVQVSTSRVRPK 161
            |:..                    :|  ||:.|:.:      ..||:..|:
 Worm   155 FIVFEEEESADKASSQTKQTFGTREC--DVKKAVPQGKRFPGAQGRMPGGR-------------- 203

  Fly   162 PGMGDPEQCYRCGRSGH----WSKECPRLYGSAGGGREPPSPLSAGG------YRDRMYGR 212
             ||..       ||.|:    |         .||.|:....|..|.|      |.:..||:
 Worm   204 -GMYG-------GRGGNNNSGW---------YAGWGQIGAMPYGATGAAWGDWYGNGYYGQ 247

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	15/71 (21%)
		RRM1_2_CoAA_like	87..152	CDD:409779	19/98 (19%)
		hnRNP-R-Q	<88..>258	CDD:273732	33/169 (20%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	16/73 (22%)
		RRM_SF	111..185	CDD:473069	15/75 (20%)