Protein Alignment lark and hrpa-1

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001040945.1
• Gene: hrpa-1 / 177101
• WormBaseID: WBGene00001999
• Length: 347
• Species: Caenorhabditis elegans
• Alignment Length: 243
• Identity: 54/243 - (22%)
• Similarity: 96/243 - (39%)
• Gaps: 47/243 - (19%)

  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQN----L 60
            |:|:|.|...|....:|..:.::|.:.:..|:::        :|||....:.:...|::.    :
 Worm    24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHII 88

  Fly    61 NGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV------- 118
            :|.|::.........|:|...|..|.:::|..:.:......:.|.|.|||||.:.:|:
 Worm    89 DGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQK 153

  Fly   119 -RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRS------ 176
             |.:|||..|....|...:.: ...:|:|....|:...|:........:.::..|.|||
 Worm   154 PRGFGFVTFDDHDSVDQCVLQ-KSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGGRSRDGQRG 217

  Fly   177 ---------GHW----SKECPRLYGSAGGGREPPSPLSAGGYRDRMYG 211
                     |.|    .:..|..||..|||.:       |||....||
 Worm   218 GYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQ-------GGYGGGNYG 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	14/76 (18%)
		RRM1_2_CoAA_like	87..152	CDD:409779	17/72 (24%)
		hnRNP-R-Q	<88..>258	CDD:273732	36/151 (24%)
hrpa-1	NP_001040945.1	RRM_SF	24..101	CDD:473069	14/76 (18%)
		RRM2_hnRNPA_like	115..187	CDD:409766	17/72 (24%)