Protein Alignment lark and rsp-3

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001370111.1
• Gene: rsp-3 / 176688
• WormBaseID: WBGene00004700
• Length: 258
• Species: Caenorhabditis elegans
• Alignment Length: 284
• Identity: 76/284 - (26%)
• Similarity: 102/284 - (35%)
• Gaps: 62/284 - (21%)

  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYG----FVHLDCVGDVQDAIKELNGRVVDGQ 147
            |::||||....|..||.::|.|||.:...||....|    ||..:...|.:||::..:|...||:
 Worm    10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGR 74

  Fly   148 PLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGR 212
            .::|:. |..|.|:...|.|.|.....|.|.:.       |..|||| ...|....|||..:.|.
 Worm    75 RIRVEF-TRGVGPRGPGGRPLQDGGDHRGGDFR-------GGRGGGR-GGGPQRRTGYRVIVEGL 130

  Fly   213 DPYPPPPPPPPFLRDRIMDG--------------------FRDYDYYDRRFEDSRDLYERRYQTS 257
                ||......|:|.:.|.                    :.|..|..|:.:|::         .
 Worm   131 ----PPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTK---------F 182

  Fly   258 RMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPP--PPRSSNGMSRYGSPTPHG 320
            |..:.....|..||.........|..|..|.||  .....||:.|  .||.|...||
 Worm   183 RSHEGETAYIRVREDNSSGGGSGGGGRDRSRSR--SPRAERRASPKYSPRRSRSRSR-------- 237

  Fly   321 YEDFSRDAFDERMISSRGMRGPSP 344
                ||.....|..|....|.|||
 Worm   238 ----SRSRSRSRSASRSPSRSPSP 257

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779
		RRM1_2_CoAA_like	87..152	CDD:409779	23/68 (34%)
		hnRNP-R-Q	<88..>258	CDD:273732	50/193 (26%)
rsp-3	NP_001370111.1	RRM1_SRSF1_like	10..80	CDD:409775	24/69 (35%)
		RRM2_SRSF1_like	123..196	CDD:410013	14/85 (16%)