Protein Alignment lark and rnp-7

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_498565.2
• Gene: rnp-7 / 176002
• WormBaseID: WBGene00004390
• Length: 332
• Species: Caenorhabditis elegans
• Alignment Length: 234
• Identity: 56/234 - (23%)
• Similarity: 84/234 - (35%)
• Gaps: 60/234 - (25%)

  Fly    48 ETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTV 112
            |.:::.|.....|..|.:.:.......|::.||...|...:|||.:..:|...::|..|:.||.:
 Worm    66 EAKEEKRRQKDELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKI 130

  Fly   113 VECDIV-------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQC 170
            .:..:|       |.|.|:......::..|.|:.:|..|||:.|.|.
 Worm   131 KKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVD------------------ 177

  Fly   171 YRCGRSGH-WSKECPRLYGSAGGG----REPPSPLS--------AGGYRDRMYGRDPYPPPPPPP 222
            |..||:.. |   .||..|...|.    ||..|.:.        .|||.||...|..
 Worm   178 YERGRTQKTW---LPRRLGGGKGDTRKTREAKSVIEEREIASGFGGGYEDRDRERSG-------- 231

  Fly   223 PFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRD 261
              .|||..|.:|:....||         :||..:...||
 Worm   232 --SRDRRQDSYRNGGGNDR---------DRRESSGGFRD 259

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	4/24 (17%)
		RRM1_2_CoAA_like	87..152	CDD:409779	19/71 (27%)
		hnRNP-R-Q	<88..>258	CDD:273732	46/189 (24%)
rnp-7	NP_498565.2	U1snRNP70_N	4..95	CDD:432406	5/28 (18%)
		RRM_snRNP70	103..192	CDD:409682	26/109 (24%)