Protein Alignment lark and rnp-4

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001369846.1
• Gene: rnp-4 / 175572
• WormBaseID: WBGene00004387
• Length: 142
• Species: Caenorhabditis elegans
• Alignment Length: 125
• Identity: 27/125 - (21%)
• Similarity: 51/125 - (40%)
• Gaps: 16/125 - (12%)

  Fly    37 DVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTK--IFVGNLTDKTRA 99
            |||.|      ....:||...|:.|...:....:..|::.:..||......  :||.|:.::...
 Worm    10 DVVAN------AERSRGRGLAQSRNRERITYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATE 68

  Fly   100 PEVRELFQKYGTVVECDI--------VRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
            .:|.:.|.:||.:....:        ::.|..|..:...:..:||.:.|...:.||.:||
 Worm    69 DDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKV 128

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	8/35 (23%)
		RRM1_2_CoAA_like	87..152	CDD:409779	16/75 (21%)
		hnRNP-R-Q	<88..>258	CDD:273732	16/72 (22%)
rnp-4	NP_001369846.1	RRM_RBM8	49..136	CDD:409762	16/80 (20%)