Protein Alignment lark and rsp-1

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_496442.1
• Gene: rsp-1 / 174748
• WormBaseID: WBGene00004698
• Length: 312
• Species: Caenorhabditis elegans
• Alignment Length: 322
• Identity: 77/322 - (23%)
• Similarity: 101/322 - (31%)
• Gaps: 121/322 - (37%)

  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
            :|::|.||.:....::...|:.||.:.:..:...:|||..|...|.:||:.:|||:.:.|:.:.:
 Worm     4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVIL 68

  Fly   152 QVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYP 216
            ..|    :|:.|.||     |.|..|          |..||.|........||.|||.   |.|.
 Worm    69 DYS----KPRGGGGD-----RGGFGG----------GGRGGARVSSYSGGGGGGRDRF---DRYD 111

  Fly   217 PPPP-------PPPFLRDRIM-------------------------------------------- 230
            ..||       .|...|.|::
 Worm   112 RGPPRRESRYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPS 176

  Fly   231 ---------DGF----RDYDYYD------------------RRFEDSRDLYERRYQTSRMRDFPP 264
                     ||.    |.....|                  .|..|.|....|....|:.|...|
 Worm   177 DLKRCIEKCDGMDLNGRKIKMIDDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSP 241

  Fly   265 PPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSR----------RSPPPPRSSNGMSRYGSP 316
            |..||||.       ....||.|.||..|...||          |||.|||.|...|..|||
 Worm   242 PKRSRRES-------KSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPPRGSRSPSEKGSP 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779
		RRM1_2_CoAA_like	87..152	CDD:409779	18/64 (28%)
		hnRNP-R-Q	<88..>258	CDD:273732	50/251 (20%)
rsp-1	NP_496442.1	RRM	<3..180	CDD:223796	42/197 (21%)
		RRM1_SRSF4_like	4..73	CDD:240783	19/72 (26%)
		RRM2_SRSF4_like	129..200	CDD:241044	4/70 (6%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910