DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and CSTF2

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:431 Identity:84/431 - (19%)
Similarity:132/431 - (30%) Gaps:140/431 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQNLNGYTL 65
            :|:||:..:....:|:.:|.:.|.||...:|        |.|||...:.::....|::||||...
Human    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly    66 NEFAIKVEAAKSRR--------APNTPTTKIFVGNLTDKTRAPE----------VRELFQKYGTV 112
            :..|::|:.|.|.:        ....|..:...|.......|||          ..::|:....:
Human    83 SGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQM 147

  Fly   113 VECDIVRN----------------YGFVHLDCVGDVQD---AIKELNGR-----VVDGQPLKVQV 153
            ..|  |:|                |..:....|..:.|   |:|.|:.:     ::.|.|..|..
Human   148 KLC--VQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQPVHG 210

  Fly   154 STSRVRPKPGMG--------DPEQCYRCGRSG-HWSKECPRLYGSAGGGREPPSPLSA------- 202
            :      .||.|        :|:........| |.:...|.:..|..||...|..:.|       
Human   211 A------GPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGP 269

  Fly   203 ------GGYR-------------DRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRD 248
                  ||.:             :|..|...:.|..|..|...:|:....:|             
Human   270 GSLAPGGGMQAQVGMPGSGPVSMERGQGTLQHSPVGPAGPASIERVQVPMQD------------- 321

  Fly   249 LYERRYQTSRMRDFPPPPISRREPMPL-PPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSR 312
                           |....:|..:|. .||..|.|..........|:.|......||...|...
Human   322 ---------------PRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH 371

  Fly   313 YGSPTPH--GYEDFSRDAFDERMISSRGMRGPSPPGRRYAP 351
            .|.|..|  |:|.                |||.|...|..|
Human   372 QGPPMHHVPGHES----------------RGPPPHELRGGP 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 19/71 (27%)
RRM1_2_CoAA_like 87..152 CDD:409779 16/98 (16%)
hnRNP-R-Q <88..>258 CDD:273732 38/238 (16%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 68/369 (18%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 21/75 (28%)
CSTF2_hinge 112..191 CDD:433869 13/80 (16%)
PHA03378 <253..455 CDD:223065 35/188 (19%)
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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