Protein Alignment lark and PABPC5

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_543022.1
• Gene: PABPC5 / 140886
• HGNCID: 13629
• Length: 382
• Species: Homo sapiens
• Alignment Length: 169
• Identity: 49/169 - (28%)
• Similarity: 79/169 - (46%)
• Gaps: 21/169 - (12%)

  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:||.|||:......|..||..:|.::.|.||      |.|.:||.::......||.::||
Human   103 SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167

  Fly    63 YTLNEFAIKV--------EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVR 119
            ..||...:.|        .||:.|.......|.:||.|:.|.....:::|||.:||......::|
Human   168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIR 232

  Fly   120 N-------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
            :       :|||..:.....|.|:.:|:|:.:||:.|.|
Human   233 DASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	23/78 (29%)
		RRM1_2_CoAA_like	87..152	CDD:409779	21/72 (29%)
		hnRNP-R-Q	<88..>258	CDD:273732	21/71 (30%)
PABPC5	NP_543022.1	PABP-1234	22..>379	CDD:130689	49/169 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	1	0.910