DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Hrb27C

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_321133.5 Gene:Hrb27C / 1281194 VectorBaseID:AGAMI1_011503 Length:412 Species:Anopheles gambiae


Alignment Length:397 Identity:89/397 - (22%)
Similarity:137/397 - (34%) Gaps:116/397 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQN----L 60
            |||:|.|..:|....|:..|.:||.|::|.|:||        :|||.....:....|::|    |
Mosquito    19 KLFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGFGFVTFADPENVERALENGPHTL 83

  Fly    61 NGYTLNEFAIKVEAA-KSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV------ 118
            :|.|::.......:. |.:|....|  |:|:|.|.......::|..|.:||||:|..|:      
Mosquito    84 DGRTIDPKPCNPRSQHKPKRTGGYP--KVFLGGLPPNITETDLRSFFCRYGTVMEVVIMYDQEKK 146

  Fly   119 --RNYGFVHLDCVGDVQ----DAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSG 177
              |.:||:..:....|:    |....::|:         ||...:..|:.|..:........ |.
Mosquito   147 KSRGFGFLSFENESAVERATTDHFVHISGK---------QVEVKKAEPRDGNQNNSNSMNTD-SY 201

  Fly   178 HW-SKECPRLYGSAGGGREPPSPLSA------------------GGYRDRMYGR----DPYPPPP 219
            .| |.:.|.:.....||  ||..:.:                  |||.....|.    ..:..||
Mosquito   202 QWGSPQAPPMGNGQMGG--PPINMQSNMIQGYQGWGTSQPQQGYGGYGAGAAGAANAYQSWGAPP 264

  Fly   220 PPPPF----LRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLS 280
            ||..:    ...:...|:..||.|:.....|...|......|               ..:||..:
Mosquito   265 PPQQWGNYNATPQQTQGYGGYDMYNNSGAGSAGGYGSGNWNS---------------WNMPPNTA 314

  Fly   281 GSLRSCSVSRGYDTMFSRRSPPP---PRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGP 342
            ||....:..     |::|....|   |.:|.|      ||                     ..||
Mosquito   315 GSAAGSTAD-----MYTRPQSGPTAGPGASAG------PT---------------------SGGP 347

  Fly   343 SPPGRRY 349
            |.||..|
Mosquito   348 SKPGSEY 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 23/76 (30%)
RRM1_2_CoAA_like 87..152 CDD:409779 18/76 (24%)
hnRNP-R-Q <88..>258 CDD:273732 43/208 (21%)
Hrb27CXP_321133.5 RRM1_hnRNPA_hnRNPD_like 20..91 CDD:409763 22/70 (31%)
RRM_SF 106..185 CDD:473069 21/89 (24%)

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