DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lark and RnpS1

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_318582.4 Gene:RnpS1 / 1278931 VectorBaseID:AGAMI1_009907 Length:323 Species:Anopheles gambiae


Alignment Length:137 Identity:36/137 - (26%)
Similarity:54/137 - (39%) Gaps:26/137 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 KSRRAPNTP-TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVR------NYGFVHLDCV--GD 131
            |.|....|| ..:|.:|.||.......:.|:|..||.:.:.|...      ..||.:::.|  ..
Mosquito   172 KRRERSVTPRPVRIHIGRLTRNVNRDHIVEIFSSYGEISKVDFPMERFQPFGRGFCYVEYVDPNG 236

  Fly   132 VQDAIKELNGRVVDGQ-----PLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAG 191
            .::|:|.::|..:|||     |:.||      :.:|.|..|....|..|      ..||...|..
Mosquito   237 AENAMKHMDGGQIDGQEITASPVLVQ------KQRPPMRRPSPIMRNNR------PMPRWRTSPM 289

  Fly   192 GGREPPS 198
            ..|..||
Mosquito   290 RYRRRPS 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 19/77 (25%)
hnRNP-R-Q <88..>258 CDD:273732 32/124 (26%)
RnpS1XP_318582.4 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.