DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lark and LOC1270935

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_309663.5 Gene:LOC1270935 / 1270935 VectorBaseID:AGAMI1_003918 Length:569 Species:Anopheles gambiae


Alignment Length:241 Identity:63/241 - (26%)
Similarity:92/241 - (38%) Gaps:41/241 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQNLNG 62
            |..|.:..|..||....||..||.:|.::...:.|:        |||:.....:....|:...:.
Mosquito   114 TTDLIVLGLPWKTTEESLREYFETFGELLVVQIKKDSKTGQSKGYGFIRFARFESQMKALSKRHL 178

  Fly    63 YTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI---VRNYGFV 124
            .......:||.::|.:.....| :|||:|.||:...:.::|:.|.|||.|.:..|   .|.:.||
Mosquito   179 IDSRWCDVKVPSSKDQTQHQMP-SKIFLGRLTEDINSDDIRDYFSKYGEVTDVFIPKPFRAFAFV 242

  Fly   125 HLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPG-------MGDPEQCY-RCGRSGHWS- 180
            ........|....|  ..::.|  ..|.|||:..||:.|       ||.....| ..||.|..| 
Mosquito   243 TFIDPHVAQSLCGE--DHLIKG--TSVYVSTASPRPEHGRHHGKGQMGGNFSNYDERGRGGGGSG 303

  Fly   181 -------KECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPP 219
                   .:..|..|..|||       ..||......|  |:.|.|
Mosquito   304 VGGSSGANDYHRGGGGGGGG-------GGGGGGGHAVG--PHVPAP 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 15/72 (21%)
RRM1_2_CoAA_like 87..152 CDD:409779 19/67 (28%)
hnRNP-R-Q <88..>258 CDD:273732 43/151 (28%)
LOC1270935XP_309663.5 TDP43_N 11..85 CDD:465833
RRM1_TDP43 116..189 CDD:409760 15/72 (21%)
RRM2_TDP43 201..270 CDD:409761 22/72 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.