DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and LOC1269848

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_061501486.1 Gene:LOC1269848 / 1269848 VectorBaseID:AGAMI1_013220 Length:379 Species:Anopheles gambiae


Alignment Length:121 Identity:33/121 - (27%)
Similarity:51/121 - (42%) Gaps:17/121 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN---YGFVHLDCVGDVQDAIKELNGRVVDGQP 148
            |::||||.......|:...|.|||.:....:.||   :.||..:...|.:||::.|:|....|..
Mosquito    12 KVYVGNLGSSASKHEIESAFGKYGPLRNVWVARNPPGFAFVEFEDKRDAEDAVRSLDGTRCCGTR 76

  Fly   149 LKVQVSTSRVRPKPGMGDPEQCYRCGRS--------------GHWSKECPRLYGSA 190
            ::|::|:.|.|.......|.:.||...|              .|.:..||....||
Mosquito    77 IRVEMSSGRSRRDERTRRPRRSYRANSSMILLLLLLLHDSVFRHRTSSCPNFASSA 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 20/67 (30%)
hnRNP-R-Q <88..>258 CDD:273732 32/120 (27%)
LOC1269848XP_061501486.1 None
Blue background indicates that the domain is not in the aligned region.

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