DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Pabpn1

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_063129984.1 Gene:Pabpn1 / 116697 RGDID:619928 Length:320 Species:Rattus norvegicus


Alignment Length:46 Identity:15/46 - (32%)
Similarity:24/46 - (52%) Gaps:6/46 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFIGNLDEKTQATELRALFEKYGTV----VECDVVKNY--GFVHME 48
            :::||:|....|.||.|.|...|:|    :.||....:  ||.::|
  Rat   170 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 15/46 (33%)
RRM1_2_CoAA_like 87..152 CDD:409779
hnRNP-R-Q <88..>258 CDD:273732
Pabpn1XP_063129984.1 None
Blue background indicates that the domain is not in the aligned region.

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