DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and RBM14

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_006319.1 Gene:RBM14 / 10432 HGNCID:14219 Length:669 Species:Homo sapiens


Alignment Length:392 Identity:112/392 - (28%)
Similarity:161/392 - (41%) Gaps:112/392 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLD-EKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNE-FAI 70
            |:|:||:| ..|...||.|||..||||:.|.|:|.:.||||........||:.|:|:.|.. .|:
Human     2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRAL 66

  Fly    71 KVEAAKSRRAPNTP--TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQ 133
            .||.::.|     |  |.||||||::....:.|:|.||::.|.|:|||:|::|.|||::...|.:
Human    67 VVEMSRPR-----PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAK 126

  Fly   134 DAIKELNGRVVDGQPLKVQVSTSRVR-------------PKPGMGDPEQCYRCGRSGHWSKECPR 185
            .||.:|||:.|.|:.:.|::||...:             .|||.||.......|.|..:.     
Human   127 AAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFD----- 186

  Fly   186 LYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLY 250
             |..|.|.       |.||:       |.....|.||.|.|||                      
Human   187 -YQQAFGN-------STGGF-------DGQARQPTPPFFGRDR---------------------- 214

  Fly   251 ERRYQTSRMRDFPP-----------PPISRREPMPLPPTLSGSLR---SCSVSRGYDTM------ 295
                  |.:|..||           |...|.:|   ..:|..:.|   |.|:..||.|.      
Human   215 ------SPLRRSPPRASYVAPLTAQPATYRAQP---SVSLGAAYRAQPSASLGVGYRTQPMTAQA 270

  Fly   296 FSRRSPP------PPR-----------SSNGMSRYG--SPTPHGYEDFSRDAFDERMISSRGMRG 341
            .|.|:.|      |.|           :::.:..||  .|:......:...|.....::|.|.:|
Human   271 ASYRAQPSVSLGAPYRGQLASPSSQSAAASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQG 335

  Fly   342 PS 343
            .|
Human   336 SS 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 28/66 (42%)
RRM1_2_CoAA_like 87..152 CDD:409779 28/64 (44%)
hnRNP-R-Q <88..>258 CDD:273732 51/182 (28%)
RBM14NP_006319.1 RRM1_CoAA 1..71 CDD:410020 30/68 (44%)
PABP-1234 <3..280 CDD:130689 101/332 (30%)
RRM2_CoAA 79..146 CDD:410021 29/66 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..175 7/27 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..232 15/80 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 284..303 2/18 (11%)
TRBP-interacting domain, interaction with STIL. /evidence=ECO:0000269|PubMed:25385835 307..354 6/31 (19%)
PRK13875 <319..433 CDD:237537 5/19 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 566..590
Blue background indicates that the domain is not in the aligned region.

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