DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Tra2a

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001393046.1 Gene:Tra2a / 101214 MGIID:1933972 Length:311 Species:Mus musculus


Alignment Length:195 Identity:60/195 - (30%)
Similarity:85/195 - (43%) Gaps:44/195 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELN 140
            |.|.:.|..|:..|...::||:|.:||.:...::|        |.:.||:.:.:.|.::|::..|
Mouse   144 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERAN 208

  Fly   141 GRVVDGQPLKVQVS-TSRVR-PKPG--MGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLS 201
            |..:||:.::|..| |.|.. |.||  ||.|......|..|.....     |..||||...|   
Mouse   209 GMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGG-----GGGGGGRRRDS--- 265

  Fly   202 AGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDY-YDRRFEDSRDLYERRYQT-SRMRDFPP 264
               |.||.|                ||..|.:.|||| |.||   |...|..||:: ||.|.:.|
Mouse   266 ---YYDRGY----------------DRGYDRYEDYDYRYRRR---SPSPYYSRYRSRSRSRSYSP 308

  Fly   265  264
            Mouse   309  308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 18/72 (25%)
hnRNP-R-Q <88..>258 CDD:273732 54/183 (30%)
Tra2aNP_001393046.1 RRM_TRA2 145..224 CDD:409798 21/78 (27%)
Blue background indicates that the domain is not in the aligned region.

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