DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Alyreffm11

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001257827.1 Gene:Alyreffm11 / 100861880 MGIID:5434648 Length:264 Species:Mus musculus


Alignment Length:130 Identity:36/130 - (27%)
Similarity:60/130 - (46%) Gaps:31/130 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDI-----VRNYGF--VHLDCVGDVQDAIKELNGRVV 144
            |:|:.||.......:::.||.::||:.:..:     .|:.|.  ||.:...|...|::|.||..:
Mouse    87 KLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPL 151

  Fly   145 DGQPLKVQVSTSRV----RP-----------KPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGR 194
            ||:|:.:|::||::    ||           .||.|    ....|.:..|:     |.||.|.||
Mouse   152 DGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSG----VLSGGGTKKWT-----LGGSQGRGR 207

  Fly   195  194
            Mouse   208  207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 20/71 (28%)
hnRNP-R-Q <88..>258 CDD:273732 35/129 (27%)
Alyreffm11NP_001257827.1 hnRNP-R-Q <26..>179 CDD:273732 25/91 (27%)
RRM_THOC4 86..160 CDD:410081 20/72 (28%)
Blue background indicates that the domain is not in the aligned region.

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