DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and syncrip

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_002933974.2 Gene:syncrip / 100144726 XenbaseID:XB-GENE-920046 Length:623 Species:Xenopus tropicalis


Alignment Length:461 Identity:94/461 - (20%)
Similarity:153/461 - (33%) Gaps:163/461 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQ 58
            |..|| ::|:|.:.......||..||||.|::.:..::        :.|.||...|::..::|::
 Frog   158 PSVGT-EIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 221

  Fly    59 NLNGYTL--------------------------------NEFAIKVE------------------ 73
            ..|.:.:                                .||:...|                  
 Frog   222 LYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNR 286

  Fly    74 ------------AAKSRRAPNTPTTKI---------------------------FVGNLTDKTRA 99
                        ||::||...:...|:                           ||.||.:....
 Frog   287 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTE 351

  Fly   100 PEVRELFQKYGTVVECDIVRNYGFVHLD-CVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPG 163
            ..:.:.|.::|.:.....:::|.|:|.| .||.|: |::|:||:.::|:.:::      |..|| 
 Frog   352 EILEKAFGQFGKLERVKKLKDYAFIHFDERVGAVK-AMEEMNGKELEGENIEI------VFAKP- 408

  Fly   164 MGDPEQCYRCGRSGHWSKECPRLYGS---AGGGREPPSPLSAG-------GYRDRMYGRDPYPPP 218
               |:| .|..|.........::|..   .||...||.....|       ||....||.|.|   
 Frog   409 ---PDQ-KRKERKAQRQAAKNQMYDEYYYYGGPHMPPPSRGRGRGGRGGYGYPSDYYGYDDY--- 466

  Fly   219 PPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSL 283
                             ||||...:.:.|..|:..:.  ...||......|.         ....
 Frog   467 -----------------YDYYGYDYHNYRGGYDDPFY--GYEDFQVGARGRG---------GRGA 503

  Fly   284 RSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSP-TPHGYEDFSRDAFDER---MISSRGMRGPSP 344
            |..:.|||       |...|||...|.|:.|.| :..|.......|..:|   :..:||.||.:.
 Frog   504 RGAAPSRG-------RGAVPPRGRAGYSQRGGPGSARGARGARGGAQQQRGRGVRGARGGRGGNV 561

  Fly   345 PGRRYA 350
            .|:|.|
 Frog   562 GGKRKA 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 17/104 (16%)
RRM1_2_CoAA_like 87..152 CDD:409779 19/92 (21%)
hnRNP-R-Q <88..>258 CDD:273732 43/207 (21%)
syncripXP_002933974.2 NURR_hnRNPQ 23..107 CDD:410954
hnRNP-R-Q 103..615 CDD:273732 94/461 (20%)
Blue background indicates that the domain is not in the aligned region.

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