DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and zcrb1

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001107973.1 Gene:zcrb1 / 100135752 XenbaseID:XB-GENE-999756 Length:215 Species:Xenopus tropicalis


Alignment Length:131 Identity:36/131 - (27%)
Similarity:60/131 - (45%) Gaps:18/131 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN--------YGFVHLDCVGDVQDAI 136
            ||:..|  ::|.||.......::..:|.|||.||:..|:::        ..||........|:.:
 Frog     6 APSKST--VYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRRSKGVAFVLFLDKESSQNCV 68

  Fly   137 KELNGRVVDGQPLKVQVSTSRVRP-----KPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREP 196
            :.||.:.:.|:.:|..::....|.     :....|..:||.||.:||.|..||:   :..|.|||
 Frog    69 RGLNNKQLFGRAIKASIAIDNGRATEFIRRRNYTDKSRCYECGDTGHLSYACPK---NMLGEREP 130

  Fly   197 P 197
            |
 Frog   131 P 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 17/72 (24%)
hnRNP-R-Q <88..>258 CDD:273732 33/123 (27%)
zcrb1NP_001107973.1 RRM_ZCRB1 9..84 CDD:409827 18/76 (24%)
PTZ00368 <97..123 CDD:173561 10/28 (36%)
Blue background indicates that the domain is not in the aligned region.

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