DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Alyreffm6

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001160110.1 Gene:Alyreffm6 / 100043231 MGIID:3782483 Length:289 Species:Mus musculus


Alignment Length:130 Identity:34/130 - (26%)
Similarity:55/130 - (42%) Gaps:31/130 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVE-------CDIVRNYGFVHLDCVGDVQDAIKELNGRVV 144
            |:|:.||.......:::.||.::||:.:       |........||.:...|...|::|.||..:
Mouse    87 KLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAHVHFERKADALKAMREYNGAPL 151

  Fly   145 DGQPLKVQVSTSRV----RP-----------KPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGR 194
            ||:|:.:.:.||::    ||           .||.|    ....|.:..|:     |.||.|.||
Mouse   152 DGRPMNIHLVTSQIDRQGRPALNSDKGGMTRNPGSG----VLSGGGTKRWT-----LGGSQGSGR 207

  Fly   195  194
            Mouse   208  207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 19/71 (27%)
hnRNP-R-Q <88..>258 CDD:273732 33/129 (26%)
Alyreffm6NP_001160110.1 FYTT 6..>66 CDD:462082
RRM_THOC4 86..160 CDD:410081 19/72 (26%)
Blue background indicates that the domain is not in the aligned region.

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