Protein Alignment lark and rbms1

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: XP_012825364.1
• Gene: rbms1 / 100036596
• XenbaseID: XB-GENE-1011124
• Length: 408
• Species: Xenopus tropicalis
• Alignment Length: 279
• Identity: 55/279 - (19%)
• Similarity: 92/279 - (32%)
• Gaps: 87/279 - (31%)

  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQNLNGYTL 65
            |:|..|...|...:|..|.:.||.:|....:        |.||||..::....:.|:..|.
 Frog    62 LYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK---- 122

  Fly    66 NEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN-------YGF 123
               |..|:|..:::....| |.:::.||.......|:..:.:.:|.|:...|:|:       .||
 Frog   123 ---ASGVQAQMAKQQEQDP-TNLYISNLPLSMDEQELESMLKPFGQVISTRILRDSSGTSRGVGF 183

  Fly   124 VHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRC--------------- 173
            ..::.....:..|...||:.              ::..||:..|.:...|
 Frog   184 ARMESTEKCEAVISHFNGKF--------------IKTLPGVSAPAEPLLCKFADGGQKKRQNQNK 234

  Fly   174 ----GRSGHWSKECP-RLYGSAGGGREPPSPLSAGGYRDRMY---------------GRDPYPPP 218
                ||:  |.:|.. ||.|.. ...:|.:.....||..|.|               ...||...
 Frog   235 YVQNGRA--WPREGEVRLAGMT-LTYDPTTAAIQNGYVRRFYPTPYSIATNRMITQTSITPYIAS 296

  Fly   219 P------------PPPPFL 225
            |            ||.|::
 Frog   297 PVSTYQVQSPSWIPPQPYI 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	17/71 (24%)
		RRM1_2_CoAA_like	87..152	CDD:409779	12/71 (17%)
		hnRNP-R-Q	<88..>258	CDD:273732	34/192 (18%)
rbms1	XP_012825364.1	RRM1_MSSP1	53..138	CDD:409900	19/82 (23%)
		RRM2_MSSP1	139..223	CDD:409903	17/97 (18%)