DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lark and msi2a

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_073769523.1 Gene:msi2a / 100002680 ZFINID:ZDB-GENE-030826-25 Length:431 Species:Danio rerio


Alignment Length:422 Identity:97/422 - (22%)
Similarity:144/422 - (34%) Gaps:122/422 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQ 58
            ||    |:|||.|..:|....||..|.|:|.:.||.|:::        :||:.. .:....|.:.
Zfish    20 PG----KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITF-ADVSSVDKVL 79

  Fly    59 NLNGYTLNEFAIKVEAAKSRRA-PN--TPTTKIFVGNLTDKTRAPEVRELFQKYGTVVEC----- 115
            ....:.|:...|..:.|..||| |.  |.|.|||||.|:..|...:|::.|:::|.|.:.     
Zfish    80 AQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFD 144

  Fly   116 -------DIVR--------------------NYGFVHLDCVGDVQDAIK----ELNGRVVD---G 146
                   |:.|                    .:|||..:....|:...:    |:|.::|:   .
Zfish   145 KTTNRHRDLRRREELTMTTGFKSNEEVLQKAGFGFVTFENEDIVEKVCEIHFHEINNKMVECKKA 209

  Fly   147 QPLKVQV---STSRVRPKP--------GMG---DPEQCYRCGR-----SGHWSKECPRLYGSAGG 192
            ||.:|..   :..|.|..|        |||   .|......||     |..:|.:.|....:|.|
Zfish   210 QPKEVMFPPGTRGRARSLPYTMDAFMLGMGMLSYPNIVATYGRGYTGFSPSYSYQFPGFPATAYG 274

  Fly   193 GREPPSPLSAGGYRDRMYGRD---PYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRY 254
            .....:..:|.|......||.   .||....|          ||.||.:|               
Zfish   275 PVAAAAVAAARGSGRATRGRSGYMAYPQNAGP----------GFPDYGFY--------------- 314

  Fly   255 QTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPH 319
              |...|....|.|..:...|.|.....|:|..|:...::.......|....|:|.:   .|.|.
Zfish   315 --SGPGDQRAAPCSFADYATLGPHTGQMLQSEHVTSTCNSPSQHHPSPDHFKSSGAN---PPRPG 374

  Fly   320 GYEDFSRDAFDERMISSRGMRGPSPPGRRYAP 351
            |:.               |...|.|....|.|
Zfish   375 GFP---------------GANSPGPVADLYGP 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 19/72 (26%)
RRM1_2_CoAA_like 87..152 CDD:409779 22/103 (21%)
hnRNP-R-Q <88..>258 CDD:273732 48/230 (21%)
msi2aXP_073769523.1 None

Return to query results.
Submit another query.