DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mrva and srsx-34

DIOPT Version :9

Sequence 1:NP_001261505.1 Gene:mrva / 38808 FlyBaseID:FBgn0035763 Length:478 Species:Drosophila melanogaster
Sequence 2:NP_505341.1 Gene:srsx-34 / 179281 WormBaseID:WBGene00016093 Length:491 Species:Caenorhabditis elegans


Alignment Length:552 Identity:105/552 - (19%)
Similarity:190/552 - (34%) Gaps:196/552 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 EEDQVVSRAGRRDNELSLPSGGCCMPSSTSHRFM--ALVFMCL-------LGFGS--YFCYDAPG 73
            |::|::::  .:|:.|            |:.|.:  |.|..||       ||.|.  |.....|.
 Worm    17 EKEQLMNK--DKDDRL------------TNWRLIITAAVVSCLNAVENSVLGIGEWPYMREIDPN 67

  Fly    74 ALQNYFKKDLNLTS---AQFTLIYSIYSWPN--------------VVLCFVGGFL---------- 111
            |...:|....:.:.   |.|.||:||:|:..              :..|.:  :|          
 Worm    68 ATAQFFGLATSASKCGHAVFALIFSIWSYKTSSVKIPLIASRLIAIAACMI--YLTIEYVKTDKR 130

  Fly   112 -----IDRLFGIRL--GTII-----------------------YMMILLVG---QLIFAC----- 138
                 :..|.||..  ||::                       ::..::||   ||||:.     
 Worm   131 YVLMAVYTLLGIANSGGTVLRGYVTLCSSNEDRPRAFAALGLSFIFSIIVGPTIQLIFSAIPYPG 195

  Fly   139 GGILDAFW-------------MMILGRFIFGIGAESL----------AVAQNSYAV-----LWFK 175
            ..|:...|             :.||..|:..|..|.:          :.:|:|:::     |:.|
 Worm   196 YEIIPGIWFHLYSAPIWISFILTILTVFVILILIEDISREKKTKLRPSESQSSFSMERWRSLYEK 260

  Fly   176 GKELNMVFGLQLSVARFGSTVNFWVMQPIYEYVSNFYKGHTALGVVLLLATLTCVMSMTCALILG 240
            .|:.|:.:.|        ..|.|:|                .:.|....:||:.:.|:...::.|
 Worm   261 LKKSNLDWKL--------IVVCFFV----------------RMAVSFSHSTLSTIGSILYMVMFG 301

  Fly   241 WMDKRAERILQRNNNPAGQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFIALGQN----FFVDR 301
            |......|:        |.|..:  :|..     |.|.|.:.|....|..| |.|:    ||...
 Worm   302 WDGATTVRV--------GSITMV--IFGV-----MSSTILLLYIFCHFGKI-LPQHKVFLFFTIA 350

  Fly   302 FGLSPAEANTVDSLVYLIAAVSSPVFGF-IIDKLGRN---VTWVFTATLTTIGAHALLTFTQLTP 362
            ||       .|..:.|.....|:||..: ...:.|.|   .:|..||    :..:.:|..:    
 Worm   351 FG-------AVYIITYPFEFTSNPVAKYNETTRAGCNPEEYSWCSTA----LAVNPMLYLS---- 400

  Fly   363 YVGMIIMGLSYSMLAASLWPLVALIIPEYQLGTAYGFCQSIQNLGLAVITIVAGIIVDHSGGEHM 427
             |.:::.|:|..:::.:|..:.:.|:.......|:|....|.::...:..|....:....|...:
 Worm   401 -VTILVAGMSIPIMSTALDTVYSRILGNIDQSVAHGAMAVIDDILYMITPIFTTTMFTLYGIGPL 464

  Fly   428 WLQLFFMGWLTIALISTGVI---WAYNNKNRG 456
            |:         :..::.|:|   ||.|.|..|
 Worm   465 WI---------VKSMAFGIIALTWAANLKKIG 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mrvaNP_001261505.1 MFS 55..448 CDD:119392 93/505 (18%)
MFS_1 58..410 CDD:284993 87/461 (19%)
srsx-34NP_505341.1 MFS 36..>229 CDD:304372 37/194 (19%)
SugarP_isomerase <49..>90 CDD:294243 9/40 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156834
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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