DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF4 and arhgef3l

DIOPT Version :9

Sequence 1:NP_648101.1 Gene:RhoGEF4 / 38806 FlyBaseID:FBgn0035761 Length:647 Species:Drosophila melanogaster
Sequence 2:XP_005162130.1 Gene:arhgef3l / 553761 ZFINID:ZDB-GENE-050522-85 Length:532 Species:Danio rerio


Alignment Length:322 Identity:69/322 - (21%)
Similarity:124/322 - (38%) Gaps:61/322 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TPRQKGYGNGFIHSPQTPLSFSRELRQVLQERNLLTAKSRRKVCSMLDSNNSSPIGSPNPD---- 63
            ||..|..|    .|.|..:||..|.|.:..     ..:||:| .|......||.:.|...|    
Zfish    99 TPALKRLG----QSIQRSISFRTEARPLPP-----MPRSRQK-ASSFPRRRSSQLWSDTVDNMSH 153

  Fly    64 --AGKRLGFRRQAIQEIISSEKSYLEQLELLMNFFVRPLKEQAIIDCSNHTLLFGQIEMIHNLNG 126
              :.|.:. |::.|.|:...||..:|.|.|:...:..|:.:..|:..|....:||.::.:..|:.
Zfish   154 ELSTKEIK-RQEVIYELTQGEKQLIEDLSLVKKVYYEPMLKLDIMTESELGQIFGTLDSLIPLHE 217

  Fly   127 ------EFLRELEANMENVAHAFLKMAPFFKLYSVYAFDYRGALFIIQDLISKNPVFRKFLEQTE 185
                  |.||..|..::.|....:...|..:.|..|..:..||..:: |...::....:||...:
Zfish   218 DLLVRLEGLRGAEKTVQEVGPTMMDWFPCLEAYITYCCNQVGAKALL-DQKKQDKRVEQFLRLCQ 281

  Fly   186 SRPEVQRKLN--SLMIVPIQRVPRYKLLLEQVLLYTSPADADYKLLKESVKEIEATASHINTCVE 248
             .....|||:  :.:.:|..|:.:|.|||:::...|.....|...|.::::.|:...:.:|....
Zfish   282 -ESSFSRKLDLWNFLDLPRSRLVKYPLLLKEIQKSTPLDHPDEDALPQAMELIQRIITEVNLKTG 345

  Fly   249 EQEITQY---LIHLQNSLVNRTPNIVKPSRRVIKEGVLQKITHKGTEIKRYCVLMSDIFMYC 307
            |.|...|   |.:.::|                               :|...:.:..|:||
Zfish   346 EAECQFYRRGLCYAEDS-------------------------------QRVAEIQASRFLYC 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF4NP_648101.1 RhoGEF 74..244 CDD:279015 39/177 (22%)
PH-like 269..>311 CDD:302622 4/39 (10%)
PH 277..374 CDD:278594 4/31 (13%)
arhgef3lXP_005162130.1 RhoGEF 165..341 CDD:279015 39/177 (22%)
PH_RhoGEF3_XPLN 355..489 CDD:269976 6/53 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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